Project: Basin-scale genetics of marine zooplankton

Acronym/Short Name:Plankton Population Genetics
Project Duration:2013-12 - 2015-11
Geolocation:Atlantic Ocean, 46 N - 46 S

Description

Description from NSF award abstract:
Marine zooplankton show strong ecological responses to climate change, but little is known about their capacity for evolutionary response. Many authors have assumed that the evolutionary potential of zooplankton is limited. However, recent studies provide circumstantial evidence for the idea that selection is a dominant evolutionary force acting on these species, and that genetic isolation can be achieved at regional spatial scales in pelagic habitats. This RAPID project will take advantage of a unique opportunity for basin-scale transect sampling through participation in the Atlantic Meridional Transect (AMT) cruise in 2014. The cruise will traverse more than 90 degrees of latitude in the Atlantic Ocean and include boreal-temperate, subtropical and tropical waters. Zooplankton samples will be collected along the transect, and mitochondrial and microsatellite markers will be used to identify the geographic location of strong genetic breaks within three copepod species. Bayesian and coalescent analytical techniques will test if these regions act as dispersal barriers. The physiological condition of animals collected in distinct ocean habitats will be assessed by measurements of egg production (at sea) as well as body size (condition index), dry weight, and carbon and nitrogen content. The PI will test the prediction that ocean regions that serve as dispersal barriers for marine holoplankton are areas of poor-quality habitat for the target species, and that this is a dominant mechanism driving population genetic structure in oceanic zooplankton.

Note: This project is funded by an NSF RAPID award. This RAPID grant supported the shiptime costs, and all the sampling reported in the AMT24 zooplankton ecology cruise report (PDF).

Online science outreach blog at: https://atlanticplankton.wordpress.com


DatasetLatest Version DateCurrent State
NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample (Plankton Population Genetics project)2017-05-25Final no updates expected
Metabarcoding zooplankton at station ALOHA: Operational taxonomic unit (OTU) tables and fasta files for representative sequences from each OTU (Plankton Population Genetics project)2017-05-25Final no updates expected
Population genomics study on the planktonic pteropod Cuvierina spp.: RADSeq data and metadata (Plankton Population Genetics project)2017-05-15Preliminary and in progress
Population genomics study on the planktonic copepod Haloptilus longicornis: RADSeq data and metadata (Plankton Population Genetics project)2017-05-15Preliminary and in progress
Pleuromamma xiphias mitochondrial genetic data (Atlantic; mtDNA) for analyses of population structure across the Atlantic Ocean2017-05-04Final no updates expected
Overview of population samples included in genetic analyses of Pleuromamma xiphias (Plankton Population Genetics)2017-05-01Final no updates expected
Haloptilus longicornis population structure (Atlantic Ocean) - Microsatellite data.2017-03-20Final no updates expected
Animal condition data from Pleuromamma xiphias (Atlantic Ocean, AMT24) (Plankton Population Genetics project)2017-03-13Final no updates expected
Population genomics study on the planktonic copepod Pleuromamma xiphias: RADSeq data and metadata (Plankton Population Genetics project)2017-03-08Preliminary and in progress
Data from: Iacchei, M., E. Butcher, E. Portner, Goetze, E. (in press) It’s about time: Insights into temporal genetic patterns in oceanic zooplankton from biodiversity indices. 2017-02-10Final no updates expected
List of all bongo and RMT tows conducted during RRS James Clark Ross cruise AMT24 from Immingham, United Kingdom to Punta Arenas, Chile in 2014 (Plankton Population Genetics project)2014-11-24Final no updates expected
List of all naupliar net tows conducted during RRS James Clark Ross cruise AMT24 from Immingham, United Kingdom to Punta Arenas, Chile in 2014 (Plankton Population Genetics project)2014-11-24Final no updates expected
List of all CTD casts that were sampled for nauplii during RRS James Clark Ross cruise AMT24 from Immingham, United Kingdom to Punta Arenas, Chile in 2014 (Plankton Population Genetics project)2014-11-24Final no updates expected

People

Principal Investigator: Erica Goetze
University of Hawaiʻi at Mānoa (SOEST)

Contact: Erica Goetze
University of Hawaiʻi at Mānoa (SOEST)


Data Management Plan

Data Management Plan received by BCO-DMO on 14 Nov 2014. (66.28 KB)
11/14/2014