Dataset: Tail beat frequency in the appendicularian Oikopleura dioica during particle tracking experiments comprised of three temperature treatments conducted in December 2015

Name: Tail beat frequency in the appendicularian Oikopleura dioica during particle tracking experiments comprised of three temperature treatments conducted in December 2015
Published: 2023-06-15
Keywords: Oikopleura dioica, temperature, filter feeding, plankton, oceans

Final no updates expectedDOI: 10.26008/1912/bco-dmo.897617.1Version 1 (2023-06-15)Dataset Type:experimental

Principal Investigator: Brad J. Gemmell (University of South Florida)

Principal Investigator, Contact: Kelly Rakow Sutherland (University of Oregon)

Scientist: Keats R. Conley (University of Oregon)

Scientist: Terra C. Hiebert (University of Oregon)

Scientist: George von Dassow (University of Oregon)

BCO-DMO Data Manager: Shannon Rauch (Woods Hole Oceanographic Institution)

Project: Collaborative Research: Comparative feeding by gelatinous grazers on microbial prey (Gelatinous Grazer Feeding)

Abstract

These data include tail beat kinematics measurements and particle tracking from the appendicularian Oikopleura dioica during experiments conducted in December 2015 at the Sars Centre for Marine Molecular Biology in Bergen, Norway. The experiments comprised three temperature treatments. The data were collected from high-speed video frames. This dataset includes measurements of tail beat frequency. Tail beat kinematic measurements were used to describe how O. dioica drives flow across food con...

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The primary data file for this dataset, "897617_tailbeat_counts.csv", contains data on all replicates for each video. The supplemental file, "897617_tailbeat_averages_and_frequency.csv", contains the averages for each video including the average tail beat frequency for each video. The videos are attached as Supplemental Files (there is one .zip folder for each temperature treatment).

Related Datasets

Gemmell, B. J., Sutherland, K. R., Conley, K. R., Hiebert, T. C., von Dassow, G. (2023) Filter area measurements from Oikopleura dioica tail beat kinematics and particle tracking experiments conducted in December 2015. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-06-15 doi:10.26008/1912/bco-dmo.897665.1

Gemmell, B. J., Sutherland, K. R., Conley, K. R., Hiebert, T. C., von Dassow, G. (2023) Inlet particle speeds from 5 high-speed video frames at 3 temperature treatments from Oikopleura dioica particle tracking experiments conducted in December 2015. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-06-15 doi:10.26008/1912/bco-dmo.897682.1

Gemmell, B. J., Sutherland, K. R., Conley, K. R., Hiebert, T. C., von Dassow, G. (2023) Tail wave amplitude from 5 high-speed video frames at 3 temperatures from Oikopleura dioica particle tracking experiments conducted in December 2015. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-06-22 doi:10.26008/1912/bco-dmo.897825.1

Related Publications

Results

Hiebert, TC, Gemmell, BJ, von Dassow, G, Conley, KR, & Sutherland, KR. (Under Review). The hydrodynamics and kinematics of the appendicularian tail underpin peristaltic pumping.

Methods

Gemmell, B. J., Jiang, H., & Buskey, E. J. (2014). A new approach to micro-scale particle image velocimetry (µPIV) for quantifying flows around free-swimming zooplankton. Journal of Plankton Research, 36(5), 1396–1401. https://doi.org/10.1093/plankt/fbu067

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Dataset: Tail beat frequency in the appendicularian Oikopleura dioica during particle tracking experiments comprised of three temperature treatments conducted in December 2015

Final no updates expectedDOI: 10.26008/1912/bco-dmo.897617.1Version 1 (2023-06-15)Dataset Type:experimental

Principal Investigator: Brad J. Gemmell (University of South Florida)

Principal Investigator, Contact: Kelly Rakow Sutherland (University of Oregon)

Scientist: Keats R. Conley (University of Oregon)

Scientist: Terra C. Hiebert (University of Oregon)

Scientist: George von Dassow (University of Oregon)

BCO-DMO Data Manager: Shannon Rauch (Woods Hole Oceanographic Institution)

Project: Collaborative Research: Comparative feeding by gelatinous grazers on microbial prey (Gelatinous Grazer Feeding)

Abstract

Cite Dataset

XXX

Views

XX

Downloads

X

Citations

Related Datasets

Related Publications

Results

Hiebert, TC, Gemmell, BJ, von Dassow, G, Conley, KR, & Sutherland, KR. (Under Review). The hydrodynamics and kinematics of the appendicularian tail underpin peristaltic pumping.

Methods

File(s)	Type	Description	Action
897617_tailbeat_counts.csv (5.24 KB)	Comma Separated Values (.csv)	Primary data file for dataset ID 897617.	Add to Cart Download

Supplemental File(s)	Type	Description	Action
Appendicularian_Video_Inventory.csv (2.77 KB)	Comma Separated Values (.csv)	Inventory/description of video files contained in the three .zip files - one for each temperature treatment. This inventory was originally provided as an Excel file and was converted to .csv by BCO-DMO.	Add to Cart Download
897617_tailbeat_averages_and_frequency.csv (1.40 KB)	Comma Separated Values (.csv)	Supplemental file for dataset ID 897617. This file contains the average frame number and time for each video, as well as tail beat frequency. Column descriptions: (column_name,definition,units,type) Temperature,"Temperature treatment (5°C, 15°C, or 25°C)",degrees Celsius,Float Video,Video identifier,unitless,String Frames_Avg,Average frame number of all replicates for the video,unitless,Float Time_Avg,Average time of all replicates for the video,seconds per beat,Float Frequency,Tail beat frequency calculated as 500/(Frames_Avg),beats per second,Float	Add to Cart Download
5C.zip (2.49 GB)	ZIP Archive (ZIP)	This .zip contains 20 .mov video files from the 5 degrees Celsius treatments. See the file inventory (Appendicularian_Video_Inventory.csv) for a description of each file.	Add to Cart Download
25C.zip (2.01 GB)	ZIP Archive (ZIP)	This .zip contains 16 .mov video files from the 25 degrees Celsius treatments. See the file inventory (Appendicularian_Video_Inventory.csv) for a description of each file.	Add to Cart Download
15C.zip (1.94 GB)	ZIP Archive (ZIP)	This .zip contains 17 .mov video files from the 15 degrees Celsius treatments. See the file inventory (Appendicularian_Video_Inventory.csv) for a description of each file.	Add to Cart Download

File(s)	Type	Description	Action
897617_tailbeat_counts.csv (5.24 KB)	Comma Separated Values (.csv)	Primary data file for dataset ID 897617.	Add to Cart Download

Supplemental File(s)	Type	Description	Action
Appendicularian_Video_Inventory.csv (2.77 KB)	Comma Separated Values (.csv)	Inventory/description of video files contained in the three .zip files - one for each temperature treatment. This inventory was originally provided as an Excel file and was converted to .csv by BCO-DMO.	Add to Cart Download
897617_tailbeat_averages_and_frequency.csv (1.40 KB)	Comma Separated Values (.csv)	Supplemental file for dataset ID 897617. This file contains the average frame number and time for each video, as well as tail beat frequency. Column descriptions: (column_name,definition,units,type) Temperature,"Temperature treatment (5°C, 15°C, or 25°C)",degrees Celsius,Float Video,Video identifier,unitless,String Frames_Avg,Average frame number of all replicates for the video,unitless,Float Time_Avg,Average time of all replicates for the video,seconds per beat,Float Frequency,Tail beat frequency calculated as 500/(Frames_Avg),beats per second,Float	Add to Cart Download
5C.zip (2.49 GB)	ZIP Archive (ZIP)	This .zip contains 20 .mov video files from the 5 degrees Celsius treatments. See the file inventory (Appendicularian_Video_Inventory.csv) for a description of each file.	Add to Cart Download
25C.zip (2.01 GB)	ZIP Archive (ZIP)	This .zip contains 16 .mov video files from the 25 degrees Celsius treatments. See the file inventory (Appendicularian_Video_Inventory.csv) for a description of each file.	Add to Cart Download
15C.zip (1.94 GB)	ZIP Archive (ZIP)	This .zip contains 17 .mov video files from the 15 degrees Celsius treatments. See the file inventory (Appendicularian_Video_Inventory.csv) for a description of each file.	Add to Cart Download

Dataset: Tail beat frequency in the appendicularian Oikopleura dioica during particle tracking experiments comprised of three temperature treatments conducted in December 2015

Principal Investigator: Brad J. Gemmell (University of South Florida)

Principal Investigator, Contact: Kelly Rakow Sutherland (University of Oregon)

Scientist: Keats R. Conley (University of Oregon)

Scientist: Terra C. Hiebert (University of Oregon)

Scientist: George von Dassow (University of Oregon)

BCO-DMO Data Manager: Shannon Rauch (Woods Hole Oceanographic Institution)

Project: Collaborative Research: Comparative feeding by gelatinous grazers on microbial prey (Gelatinous Grazer Feeding)

Abstract

Metadata

XXX

XX

X

Related Datasets

Related Publications

Dataset: Tail beat frequency in the appendicularian Oikopleura dioica during particle tracking experiments comprised of three temperature treatments conducted in December 2015

Principal Investigator: Brad J. Gemmell (University of South Florida)

Principal Investigator, Contact: Kelly Rakow Sutherland (University of Oregon)

Scientist: Keats R. Conley (University of Oregon)

Scientist: Terra C. Hiebert (University of Oregon)

Scientist: George von Dassow (University of Oregon)

BCO-DMO Data Manager: Shannon Rauch (Woods Hole Oceanographic Institution)

Project: Collaborative Research: Comparative feeding by gelatinous grazers on microbial prey (Gelatinous Grazer Feeding)

Abstract

Metadata

XXX

XX

X

Related Datasets

Related Publications