Dataset: Symbiont psbA and ORF host sequences generated as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021

Name: Symbiont psbA and ORF host sequences generated as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021
Published: 2022-12-20
Keywords: ocean acidification, coral reefs, acclimatization, environmental variability, extreme environments, oceans

Final no updates expectedDOI: 10.26008/1912/bco-dmo.885679.1Version 1 (2022-12-20)Dataset Type:Other Field Results

Principal Investigator: Katie Barott (University of Pennsylvania)

Co-Principal Investigator: Kristen Brown (University of Pennsylvania)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress (Coral Resilience)

Abstract

This dataset contains symbiont psbA and ORF host sequences and accession information at the National Center for Biotechnology Information (NCBI)'s Genbank database. These data were collected as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021 (Brown et al., 2022). Abstract for all data from the study (Brown et al., 2022) including this dataset: Ocean acidifica...

Cite Dataset

Centroid: latitude: -23.27, longitude: 151.55
Temporal Extent: 2021-01-06 - 2021-04-06

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The truncates sequences were submitted to GenBank under the following accession numbers (accessible from the below "popsets"):

"Cladocopium latusorum photosystem II D1/D2 subunit (psbA) gene, partial cds; chloroplast."
* popset: https://www.ncbi.nlm.nih.gov/popset/2310683771
* accessions OP279755 – OP279774

"Pocillopora damicornis ATP synthase subunit 6 (ATP6) gene, complete cds; and control region, complete sequence; mitochondrial."
* popset: https://www.ncbi.nlm.nih.gov/popset/2310683883
* accessions OP296521 - OP296503

This dataset contains two fasta files aggregating sequences from the above popsets at NCBI.

Related Datasets

Brown, K. T., Mello-Athayde, M. A., Sampayo, E. M., Chai, A., Dove, S., & Barott, K. L. (2022). Cladocopium latusorum photosystem II D1/D2 subunit (psbA) gene, partial cds; chloroplast. The National Center for Biotechnology Information PopSet: 2310683771. Available from https://www.ncbi.nlm.nih.gov/popset/2310683771

IsRelatedTo

Dataset:

Brown, K. T., Mello-Athayde, M. A., Sampayo, E. M., Chai, A., Dove, S., & Barott, K. L. (2022). Pocillopora damicornis ATP synthase subunit 6 (ATP6) gene, complete cds; and control region, complete sequence; mitochondrial. The National Center for Biotechnology Information PopSet: 2310683883. Available from https://www.ncbi.nlm.nih.gov/popset/2310683883

Related Publications

Results

Brown, K. T., Mello-Athayde, M. A., Sampayo, E. M., Chai, A., Dove, S., & Barott, K. L. (2022). Environmental memory gained from exposure to extreme pCO2 variability promotes coral cellular acid–base homeostasis. Proceedings of the Royal Society B: Biological Sciences, 289(1982). https://doi.org/10.1098/rspb.2022.0941

Methods

Flot, J.-F., & Tillier, S. (2007). The mitochondrial genome of Pocillopora (Cnidaria: Scleractinia) contains two variable regions: The putative D-loop and a novel ORF of unknown function. Gene, 401(1-2), 80–87. doi:10.1016/j.gene.2007.07.006

Methods

LaJeunesse, T. C., & Thornhill, D. J. (2011). Improved Resolution of Reef-Coral Endosymbiont (Symbiodinium) Species Diversity, Ecology, and Evolution through psbA Non-Coding Region Genotyping. PLoS ONE, 6(12), e29013. https://doi.org/10.1371/journal.pone.0029013

Methods

LaJeunesse, T. C., Loh, W. K. W., van Woesik, R., Hoegh-Guldberg, O., Schmidt, G. W., & Fitt, W. K. (2003). Low symbiont diversity in southern Great Barrier Reef corals, relative to those of the Caribbean. Limnology and Oceanography, 48(5), 2046–2054. Portico. https://doi.org/10.4319/lo.2003.48.5.2046

Methods

Moore, R. B. (2003). Highly organized structure in the non-coding region of the psbA minicircle from clade C Symbiodinium. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 53(6), 1725–1734. https://doi.org/10.1099/ijs.0.02594-0

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Dataset: Symbiont psbA and ORF host sequences generated as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021

Final no updates expectedDOI: 10.26008/1912/bco-dmo.885679.1Version 1 (2022-12-20)Dataset Type:Other Field Results

Principal Investigator: Katie Barott (University of Pennsylvania)

Co-Principal Investigator: Kristen Brown (University of Pennsylvania)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress (Coral Resilience)

Abstract

Cite Dataset

Centroid: latitude: -23.27, longitude: 151.55
Temporal Extent: 2021-01-06 - 2021-04-06

XXX

Views

XX

Downloads

X

Citations

The truncates sequences were submitted to GenBank under the following accession numbers (accessible from the below "popsets"):

"Cladocopium latusorum photosystem II D1/D2 subunit (psbA) gene, partial cds; chloroplast."
* popset: https://www.ncbi.nlm.nih.gov/popset/2310683771
* accessions OP279755 – OP279774

This dataset contains two fasta files aggregating sequences from the above popsets at NCBI.

Related Datasets

IsRelatedTo

Dataset:

Related Publications

Results

Methods

File(s)	Type	Description	Action
KB_psbaseqs_Genbank.fasta (21.56 KB)	FASTA	Sequences (fasta format) with the Genbank accession numbers for the deposited symbiont psbA host sequences. This fasta file aggregates data under NCBI popset 2310683771 Accessions (OP279755.1 - OP279774.1 ) Brown, K. T., Mello-Athayde, M. A., Sampayo, E. M., Chai, A., Dove, S., & Barott, K. L. (2022). Cladocopium latusorum photosystem II D1/D2 subunit (psbA) gene, partial cds; chloroplast. The National Center for Biotechnology Information PopSet: 2310683771. Available from https://www.ncbi.nlm.nih.gov/popset/2310683771	Add to Cart Download
KB_ORFseqs_GenBank.fasta (21.21 KB)	FASTA	Sequences (fasta format) with the Genbank accession numbers for the deposited symbiont ORF host sequences. This fasta file aggregates data under NCBI popset, Accessions (OP296503.1 - OP296521.1): Brown, K. T., Mello-Athayde, M. A., Sampayo, E. M., Chai, A., Dove, S., & Barott, K. L. (2022). Pocillopora damicornis ATP synthase subunit 6 (ATP6) gene, complete cds; and control region, complete sequence; mitochondrial. The National Center for Biotechnology Information PopSet: 2310683883. Available from https://www.ncbi.nlm.nih.gov/popset/2310683883	Add to Cart Download

File(s)	Type	Description	Action
KB_psbaseqs_Genbank.fasta (21.56 KB)	FASTA	Sequences (fasta format) with the Genbank accession numbers for the deposited symbiont psbA host sequences. This fasta file aggregates data under NCBI popset 2310683771 Accessions (OP279755.1 - OP279774.1 ) Brown, K. T., Mello-Athayde, M. A., Sampayo, E. M., Chai, A., Dove, S., & Barott, K. L. (2022). Cladocopium latusorum photosystem II D1/D2 subunit (psbA) gene, partial cds; chloroplast. The National Center for Biotechnology Information PopSet: 2310683771. Available from https://www.ncbi.nlm.nih.gov/popset/2310683771	Add to Cart Download
KB_ORFseqs_GenBank.fasta (21.21 KB)	FASTA	Sequences (fasta format) with the Genbank accession numbers for the deposited symbiont ORF host sequences. This fasta file aggregates data under NCBI popset, Accessions (OP296503.1 - OP296521.1): Brown, K. T., Mello-Athayde, M. A., Sampayo, E. M., Chai, A., Dove, S., & Barott, K. L. (2022). Pocillopora damicornis ATP synthase subunit 6 (ATP6) gene, complete cds; and control region, complete sequence; mitochondrial. The National Center for Biotechnology Information PopSet: 2310683883. Available from https://www.ncbi.nlm.nih.gov/popset/2310683883	Add to Cart Download

Dataset: Symbiont psbA and ORF host sequences generated as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021

Principal Investigator: Katie Barott (University of Pennsylvania)

Co-Principal Investigator: Kristen Brown (University of Pennsylvania)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress (Coral Resilience)

Abstract

Metadata

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Related Datasets

Related Publications

Dataset: Symbiont psbA and ORF host sequences generated as part of a study of pCO2 variability on the reef-building coral Pocillopora damicornis conducted at Heron Island Research Station, Heron Island, southern Great Barrier Reef in 2021

Principal Investigator: Katie Barott (University of Pennsylvania)

Co-Principal Investigator: Kristen Brown (University of Pennsylvania)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress (Coral Resilience)

Abstract

Metadata

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XX

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Related Datasets

Related Publications