Dataset: Metagenomic data from site U1382B at North Pond (IODP 336), western flank of the mid-Atlantic Ridge from core samples collected in November of 2011

Final no updates expectedVersion 1 (2020-04-22)Dataset Type:Cruise Results

Principal Investigator: Adina Paytan (University of California-Santa Cruz)

Co-Principal Investigator: Dr Delphine Defforey (University of California-Santa Cruz)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: Center for Dark Energy Biosphere Investigations (C-DEBI)

Project: Potential phosphorus uptake mechanisms of the deep sedimentary biosphere (Deep sea sediments)

Abstract

Metagenomic data from site U1382B at North Pond (IODP 336), western flank of the mid-Atlantic Ridge from core samples collected on 2011-11-08. These data were published in Defforey, D. (2016). Metagenomic sequences are available at the National Center for Biotechnology Information SRA database: https://www.ncbi.nlm.nih.gov/sra/?term=SRP096133, BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA360271.

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Metagenomic data from site U1382B at North Pond (IODP 336), western flank of the mid-Atlantic Ridge from core samples collected on 2011-11-08.  These data were published in Defforey, D. (2016).

Metagenomic sequences are available at the National Center for Biotechnology Information SRA database: https://www.ncbi.nlm.nih.gov/sra/?term=SRP096133, BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA360271.

​Additional award information:

* NSF C-DEBI subaward # 156246 to Adina Paytan
* NSF C-DEBI subaward # 157598 to Delphine Defforey

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Related Publications

Results
Defforey, D. (2016). Phosphorus cycling in the deep sedimentary subseafloor environment. PhD Thesis, UC Santa Cruz.
Methods
Capella-Gutierrez, S., Silla-Martinez, J. M., & Gabaldon, T. (2009). trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics, 25(15), 1972–1973. doi:10.1093/bioinformatics/btp348
Methods
Edwards, K.J., Bach, W., Klaus, A., et al. (2012). Expedition 336 summary. Proc. IODP, 336: Tokyo (Integrated Ocean Drilling Program Management International, Inc.). doi:10.2204/iodp.proc.336.101.2012
Methods
Ludwig, W. (2004). ARB: a software environment for sequence data. Nucleic Acids Research, 32(4), 1363–1371. doi:10.1093/nar/gkh293
Methods
Mills, H. J., Reese, B. K., & Peter, C. S. (2012). Characterization of Microbial Population Shifts during Sample Storage. Frontiers in Microbiology, 3. doi:10.3389/fmicb.2012.00049

Paytan, A., Defforey, D. (2020) Metagenomic data from site U1382B at North Pond (IODP 336), western flank of the mid-Atlantic Ridge from core samples collected in November of 2011. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2020-04-22 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/809862 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation