Dataset: FASTA file of protein identifications from R/V Kilo Moana KM1128 in the North Pacific during 2011 (MetZyme project)

Name: FASTA file of protein identifications from R/V Kilo Moana KM1128 in the North Pacific during 2011 (MetZyme project)
Published: 2017-07-14
Keywords: oceans

Final no updates expectedVersion 1 (2017-07-14)Dataset Type:Cruise Results

Principal Investigator: Mak A. Saito (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Hannah Ake (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: U.S. GEOTRACES (U.S. GEOTRACES)

Project: Connecting Trace Elements and Metalloenzymes Across Marine Biogeochemical Gradients (GPc03) (MetZyme)

Abstract

FASTA file of protein identifications from the KM1128 in 2011. There is one entry for every protein ID.

Cite Dataset

Spatial Extent: N:21.46 E:-151.34 S:-17.05 W:-177.71
Temporal Extent: 2011-10-11 - 2018-10-25

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Citations

These data are part of the Ocean Protein Portal "MetZyme 0.2" dataset version 5 (https://proteinportal.whoi.edu/; Saito et al., 2020).

Related Datasets

Protein Portal (2024). Ocean Protein Portal. Available from https://proteinportal.whoi.edu/

IsRelatedTo

Dataset: Station locations
Relationship Description: Station locations and sampling information for these data.

Saito, M. (2019) Station locations for the global metaproteomic dataset from R/V Kilo Moana cruise KM1128, the METZYME expedition in the tropical North Pacific in 2011. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 3) Version Date 2019-04-12 doi:10.1575/1912/bco-dmo.730891.3

IsRelatedTo

Dataset: Peptide spectral counts (MetZyme 0.2)
Relationship Description: Related peptides and their spectral counts. This dataset is part of the same "MetZyme 0.2" dataset at the Ocean Protein Portal (https://proteinportal.whoi.edu/).

Saito, M. A. (2021) Peptides and their spectral counts from KM1128 the METZYME expedition on R/V Kilo Moana in the tropical North Pacific in 2011. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 4) Version Date 2021-03-30 http://lod.bco-dmo.org/id/dataset/731314

IsRelatedTo

Dataset: Total spectral count of proteins (MetZyme 0.2)
Relationship Description: This dataset is part of the same "MetZyme 0.2" dataset at the Ocean Protein Portal (https://proteinportal.whoi.edu/).

Saito, M. A. (2022) Total spectral count of proteins from R/V Kilo Moana cruise KM1128 for the METZYME expedition in the tropical North Pacific in 2011. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 5) Version Date 2022-07-06 http://lod.bco-dmo.org/id/dataset/730722

Related Publications

Methods

Saito, M. A., Bertrand, E. M., Duffy, M. E., Gaylord, D. A., Held, N. A., Hervey, W. J., Hettich, R. L., Jagtap, P. D., Janech, M. G., Kinkade, D. B., Leary, D. H., McIlvin, M. R., Moore, E. K., Morris, R. M., Neely, B. A., Nunn, B. L., Saunders, J. K., Shepherd, A. I., Symmonds, N. I., & Walsh, D. A. (2019). Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing. Journal of Proteome Research, 18(4), 1461–1476. https://doi.org/10.1021/acs.jproteome.8b00761

Related Research

Saito, M. A., Saunders, J. K., Chagnon, M., Gaylord, D. A., Shepherd, A., Held, N. A., Dupont, C., Symmonds, N., York, A., Charron, M., & Kinkade, D. B. (2020). Development of an Ocean Protein Portal for Interactive Discovery and Education. Journal of Proteome Research, 20(1), 326–336. https://doi.org/10.1021/acs.jproteome.0c00382

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Dataset: FASTA file of protein identifications from R/V Kilo Moana KM1128 in the North Pacific during 2011 (MetZyme project)

Final no updates expectedVersion 1 (2017-07-14)Dataset Type:Cruise Results

Principal Investigator: Mak A. Saito (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Hannah Ake (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: U.S. GEOTRACES (U.S. GEOTRACES)

Project: Connecting Trace Elements and Metalloenzymes Across Marine Biogeochemical Gradients (GPc03) (MetZyme)

Abstract

FASTA file of protein identifications from the KM1128 in 2011. There is one entry for every protein ID.

Cite Dataset

Spatial Extent: N:21.46 E:-151.34 S:-17.05 W:-177.71
Temporal Extent: 2011-10-11 - 2018-10-25

XXX

Views

XX

Downloads

X

Citations

These data are part of the Ocean Protein Portal "MetZyme 0.2" dataset version 5 (https://proteinportal.whoi.edu/; Saito et al., 2020).

Related Datasets

Protein Portal (2024). Ocean Protein Portal. Available from https://proteinportal.whoi.edu/

IsRelatedTo

Dataset: Station locations
Relationship Description: Station locations and sampling information for these data.

IsRelatedTo

Related Publications

Methods

Related Research

Dataset: FASTA file of protein identifications from R/V Kilo Moana KM1128 in the North Pacific during 2011 (MetZyme project)

Principal Investigator: Mak A. Saito (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Hannah Ake (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: U.S. GEOTRACES (U.S. GEOTRACES)

Project: Connecting Trace Elements and Metalloenzymes Across Marine Biogeochemical Gradients (GPc03) (MetZyme)

Abstract

Metadata

XXX

XX

X

Related Datasets

Related Publications

Dataset: FASTA file of protein identifications from R/V Kilo Moana KM1128 in the North Pacific during 2011 (MetZyme project)

Principal Investigator: Mak A. Saito (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Hannah Ake (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: U.S. GEOTRACES (U.S. GEOTRACES)

Project: Connecting Trace Elements and Metalloenzymes Across Marine Biogeochemical Gradients (GPc03) (MetZyme)

Abstract

Metadata

XXX

XX

X

Related Datasets

Related Publications